Reading and Writing Data

Functions for reading and writing Spark DataFrames.

as.traitdata

Standardize format of traitdata

as.trait

Create a trait definition

as.thesaurus

Create a list of trait definitions (a thesaurus of traits)

standardize.taxonomy

Standardize scientific names of species

standardize.traits

Standardize trait names and harmonize measured values and reported facts

standardize.exploratories

Standardize Georeference from Biodiversity Exploratories Plot ID

standardize

Standardize trait datasets

mutate.traitdata

Mutate traits within a traitdata object.

rbind

Combine trait datasets

Helper functions

Internal functions called by the main functions of the package.

read.service read.service.blocks

BExIS access over a Webservice

fixlogical

Standardise logical variables

get_gbif_taxonomy

Get accepted canonical names and taxonomy for a given species name